Package: spatialAtomizeR 0.2.8

spatialAtomizeR: Spatial Analysis with Misaligned Data Using Atom-Based Regression Models
Implements atom-based regression models (ABRM) for analyzing spatially misaligned data. Provides functions for simulating misaligned spatial data, preparing NIMBLE model inputs, running MCMC diagnostics, and providing results. All main functions return S3 objects with print(), summary(), and plot() methods for intuitive result exploration. Methods originally described in Mugglin et al. (2000) <doi:10.1080/01621459.2000.10474279>, further investigated in Trevisani & Gelfand (2013), and applied in Nethery et al. (2023) <doi:10.1101/2023.01.10.23284410>.
Authors:
spatialAtomizeR_0.2.8.tar.gz
spatialAtomizeR_0.2.8.zip(r-4.7)spatialAtomizeR_0.2.8.zip(r-4.6)spatialAtomizeR_0.2.8.zip(r-4.5)
spatialAtomizeR_0.2.8.tgz(r-4.6-any)spatialAtomizeR_0.2.8.tgz(r-4.5-any)
spatialAtomizeR_0.2.8.tar.gz(r-4.7-any)spatialAtomizeR_0.2.8.tar.gz(r-4.6-any)
spatialAtomizeR_0.2.8.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
spatialAtomizeR/json (API)
NEWS
| # Install 'spatialAtomizeR' in R: |
| install.packages('spatialAtomizeR', repos = c('https://bellayqian.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/bellayqian/spatialatomizer/issues
Last updated from:cedaf0023e. Checks:7 WARNING, 1 ERROR, 1 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | WARNING | 286 | ||
| source / vignettes | ERROR | 225 | ||
| linux-release-x86_64 | WARNING | 267 | ||
| macos-release-arm64 | WARNING | 239 | ||
| macos-oldrel-arm64 | WARNING | 294 | ||
| windows-devel | WARNING | 233 | ||
| windows-release | WARNING | 250 | ||
| windows-oldrel | WARNING | 227 | ||
| wasm-release | OK | 145 |
Exports:biasedUrn_rmfncdmfnchypggen_correlated_spatget_abrm_modelregister_nimble_distributionsrmfnchypgRmfnchypgrun_abrmrun_nimble_modelsimulate_misaligned_datawaic
Dependencies:BiasedUrnbootclassclassIntclicodacpp11DBIdeldirdplyre1071farvergenericsggplot2gluegtableigraphisobandKernSmoothlabelinglatticelifecyclemagrittrMASSMatrixnimblenumDerivpillarpkgconfigplyrpracmaproxypurrrR6rasterRColorBrewerRcppreshape2rlangs2S7scalessfspspDataspdepstringistringrterratibbletidyrtidyselectunitsutf8vctrsviridisLitewithrwk
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Extract Coefficients from ABRM Objects | coef.abrm |
| Credible Intervals for ABRM Objects | confint.abrm |
| Fitted Values for ABRM Objects | fitted.abrm |
| Get ABRM Model Code for NIMBLE | get_abrm_model |
| Plot Method for ABRM Objects | plot.abrm |
| Plot Misaligned Data Object | plot.misaligned_data |
| Print Method for ABRM Objects | print.abrm |
| Print Method for Misaligned Data Objects | print.misaligned_data |
| Print Method for summary.abrm Objects | print.summary.abrm |
| Print Method for vcov.abrm Objects | print.vcov.abrm |
| Print Method for waic_abrm Objects | print.waic_abrm |
| Run ABRM Analysis | run_abrm |
| Run NIMBLE Model with Diagnostics | run_nimble_model |
| Simulate Misaligned Spatial Data | simulate_misaligned_data |
| Summary Method for ABRM Objects | summary.abrm |
| Summary Method for Misaligned Data Objects | summary.misaligned_data |
| Variance-Covariance Method for ABRM Objects | vcov.abrm |
| Generic Function for WAIC | waic |
| WAIC for ABRM Objects | waic.abrm |
