{ "_id": "6a116ceeacfb0bcc41cf4eb7", "Package": "spatialAtomizeR", "Type": "Package", "Title": "Spatial Analysis with Misaligned Data Using Atom-Based\nRegression Models", "Version": "0.2.8", "Date": "2026-03-24", "Authors@R": "c(\nperson(\"Yunzhe\", \"Qian\", email = \"qyzanemos@gmail.com\", role = c(\"aut\", \"cre\")),\nperson(\"Rachel\", \"Nethery\", email = \"rnethery@hsph.harvard.edu\", role = \"aut\"),\nperson(\"Nancy\", \"Krieger\", role = \"ctb\",\ncomment = \"Contributed to the project conceptualization and manuscript\"),\nperson(\"Nykesha\", \"Johnson\", role = \"ctb\",\ncomment = \"Contributed to the project conceptualization and manuscript\")\n)", "Description": "Implements atom-based regression models (ABRM) for\nanalyzing spatially misaligned data. Provides functions for\nsimulating misaligned spatial data, preparing NIMBLE model\ninputs, running MCMC diagnostics, and providing results. All\nmain functions return S3 objects with print(), summary(), and\nplot() methods for intuitive result exploration. Methods\noriginally described in Mugglin et al. (2000)\n, further investigated in\nTrevisani & Gelfand (2013), and applied in Nethery et al.\n(2023) .", "License": "MIT + file LICENSE", "Encoding": "UTF-8", "VignetteBuilder": "knitr", "URL": "https://github.com/bellayqian/spatialAtomizeR", "BugReports": "https://github.com/bellayqian/spatialAtomizeR/issues", "RoxygenNote": "7.3.3", "Config/pak/sysreqs": "libabsl-dev cmake libgdal-dev gdal-bin libgeos-dev\nlibglpk-dev make libicu-dev libxml2-dev libssl-dev libproj-dev\nlibsqlite3-dev libudunits2-dev", "Repository": "https://bellayqian.r-universe.dev", "Date/Publication": "2026-03-24 19:49:24 UTC", "RemoteUrl": "https://github.com/bellayqian/spatialatomizer", "RemoteRef": "HEAD", "RemoteSha": "cedaf0023efca72e0fb4da497f7bbf8ffadfcc70", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-23 08:55:31 UTC", "User": "root" }, "Author": "Yunzhe Qian [aut, cre],\nRachel Nethery [aut],\nNancy Krieger [ctb] (Contributed to the project conceptualization and\nmanuscript),\nNykesha Johnson [ctb] (Contributed to the project conceptualization and\nmanuscript)", "Maintainer": "Yunzhe Qian ", "MD5sum": "a96531e8ac3ec2bdca88bd6aaba91227", "_user": "bellayqian", "_type": "src", "_file": "spatialAtomizeR_0.2.8.tar.gz", "_fileid": "2634f5e79531361ad7564b67acab4d933f6fdcc91f849576f9f7c57a0ae356a6", "_filesize": 1698542, "_sha256": "2634f5e79531361ad7564b67acab4d933f6fdcc91f849576f9f7c57a0ae356a6", "_created": "2026-05-23T08:55:31.000Z", "_published": "2026-05-23T09:01:34.501Z", "_distro": "noble", "_jobs": [ { "job": 77510781503, "time": 286, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "WARNING", "artifact": "7175809556" }, { "job": 77510781508, "time": 267, "config": "linux-release-x86_64", "r": "4.6.0", "check": "WARNING", "artifact": "7175807762" }, { "job": 77510781479, "time": 294, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "WARNING", "artifact": "7175807335" }, { "job": 77510781469, "time": 239, "config": "macos-release-arm64", "r": "4.6.0", "check": "WARNING", "artifact": "7175801833" }, { "job": 77510602134, "time": 225, "config": "source", "r": "4.6.0", "check": "ERROR", "artifact": "7175784045" }, { "job": 77510781463, "time": 145, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7175797271" }, { "job": 77510781477, "time": 233, "config": "windows-devel", "r": "4.7.0", "check": "WARNING", "artifact": "7175804744" }, { "job": 77510781476, "time": 227, "config": "windows-oldrel", "r": "4.5.3", "check": "WARNING", "artifact": "7175804251" }, { "job": 77510781484, "time": 250, "config": "windows-release", "r": "4.6.0", "check": "WARNING", "artifact": "7175806197" } ], "_buildurl": "https://github.com/r-universe/bellayqian/actions/runs/26328568985", "_status": "failure", "_host": "GitHub-Actions", "_upstream": "https://github.com/bellayqian/spatialatomizer", "_commit": { "id": "cedaf0023efca72e0fb4da497f7bbf8ffadfcc70", "author": "Yunzhe Qian ", "committer": "Yunzhe Qian ", "message": "Update v0.2.8\n", "time": 1774381764 }, "_maintainer": { "name": "Yunzhe Qian", "email": "qyzanemos@gmail.com", "login": "bellayqian", "description": "", "uuid": 97128009 }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.0.0", "role": "Depends" }, { "package": "nimble", "role": "Imports" }, { "package": "sp", "role": "Imports" }, { "package": "sf", "role": "Imports" }, { "package": "spdep", "role": "Imports" }, { "package": "MASS", "role": "Imports" }, { "package": "dplyr", "role": "Imports" }, { "package": "tidyr", "role": "Imports" }, { "package": "ggplot2", "role": "Imports" }, { "package": "reshape2", "role": "Imports" }, { "package": "coda", "role": "Imports" }, { "package": "BiasedUrn", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "grDevices", "role": "Imports" }, { "package": "methods", "role": "Imports" }, { "package": "raster", "role": "Imports" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "tigris", "role": "Suggests" } ], "_owner": "bellayqian", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-42", "n": 3 }, { "week": "2025-43", "n": 3 }, { "week": "2025-44", "n": 2 }, { "week": "2025-45", "n": 6 }, { "week": "2025-46", "n": 3 }, { "week": "2025-47", "n": 3 }, { "week": "2025-48", "n": 1 }, { "week": "2025-49", "n": 6 }, { "week": "2025-50", "n": 2 }, { "week": "2025-51", "n": 4 }, { "week": "2026-06", "n": 2 }, { "week": "2026-07", "n": 12 }, { "week": "2026-10", "n": 7 }, { "week": "2026-13", "n": 1 } ], "_tags": [ { "name": "v0.2.2", "date": "2025-11-20" } ], "_stars": 5, "_contributors": [ { "user": "bellayqian", "count": 47, "uuid": 97128009 }, { "user": "rachelnethery", "count": 8, "uuid": 29979260 } ], "_userbio": { "uuid": 97128009, "type": "user", "name": "Bella Qian" }, "_downloads": { "count": 503, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/spatialAtomizeR" }, "_devurl": "https://github.com/bellayqian/spatialatomizer", "_searchresults": 3, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "extra/spatialAtomizeR.html", "manual.pdf" ], "_homeurl": "https://github.com/bellayqian/spatialatomizer", "_realowner": "bellayqian", "_cranurl": true, "_releases": [ { "version": "0.2.3", "date": "2025-12-11" }, { "version": "0.2.4", "date": "2025-12-17" }, { "version": "0.2.5", "date": "2026-02-09" }, { "version": "0.2.6", "date": "2026-02-16" }, { "version": "0.2.7", "date": "2026-03-08" }, { "version": "0.2.8", "date": "2026-03-24" } ], "_exports": [ "biasedUrn_rmfnc", "dmfnchypg", "gen_correlated_spat", "get_abrm_model", "register_nimble_distributions", "rmfnchypg", "Rmfnchypg", "run_abrm", "run_nimble_model", "simulate_misaligned_data", "waic" ], "_help": [ { "page": "coef.abrm", "title": "Extract Coefficients from ABRM Objects", "topics": [ "coef.abrm" ] }, { "page": "confint.abrm", "title": "Credible Intervals for ABRM Objects", "topics": [ "confint.abrm" ] }, { "page": "fitted.abrm", "title": "Fitted Values for ABRM Objects", "topics": [ "fitted.abrm" ] }, { "page": "get_abrm_model", "title": "Get ABRM Model Code for NIMBLE", "topics": [ "get_abrm_model" ] }, { "page": "plot.abrm", "title": "Plot Method for ABRM Objects", "topics": [ "plot.abrm" ] }, { "page": "plot.misaligned_data", "title": "Plot Misaligned Data Object", "topics": [ "plot.misaligned_data" ] }, { "page": "print.abrm", "title": "Print Method for ABRM Objects", "topics": [ "print.abrm" ] }, { "page": "print.misaligned_data", "title": "Print Method for Misaligned Data Objects", "topics": [ "print.misaligned_data" ] }, { "page": "print.summary.abrm", "title": "Print Method for summary.abrm Objects", "topics": [ "print.summary.abrm" ] }, { "page": "print.vcov.abrm", "title": "Print Method for vcov.abrm Objects", "topics": [ "print.vcov.abrm" ] }, { "page": "print.waic_abrm", "title": "Print Method for waic_abrm Objects", "topics": [ "print.waic_abrm" ] }, { "page": "run_abrm", "title": "Run ABRM Analysis", "topics": [ "run_abrm" ] }, { "page": "run_nimble_model", "title": "Run NIMBLE Model with Diagnostics", "topics": [ "run_nimble_model" ] }, { "page": "simulate_misaligned_data", "title": "Simulate Misaligned Spatial Data", "topics": [ "simulate_misaligned_data" ] }, { "page": "summary.abrm", "title": "Summary Method for ABRM Objects", "topics": [ "summary.abrm" ] }, { "page": "summary.misaligned_data", "title": "Summary Method for Misaligned Data Objects", "topics": [ "summary.misaligned_data" ] }, { "page": "vcov.abrm", "title": "Variance-Covariance Method for ABRM Objects", "topics": [ "vcov.abrm" ] }, { "page": "waic", "title": "Generic Function for WAIC", "topics": [ "waic" ] }, { "page": "waic.abrm", "title": "WAIC for ABRM Objects", "topics": [ "waic.abrm" ] } ], "_pkglogo": "https://github.com/bellayqian/spatialatomizer/raw/HEAD/man/figures/logo.png", "_readme": "https://github.com/bellayqian/spatialatomizer/raw/HEAD/README.md", "_rundeps": [ "BiasedUrn", "boot", "class", "classInt", "cli", "coda", "cpp11", "DBI", "deldir", "dplyr", "e1071", "farver", "generics", "ggplot2", "glue", "gtable", "igraph", "isoband", "KernSmooth", "labeling", "lattice", "lifecycle", "magrittr", "MASS", "Matrix", "nimble", "numDeriv", "pillar", "pkgconfig", "plyr", "pracma", "proxy", "purrr", "R6", "raster", "RColorBrewer", "Rcpp", "reshape2", "rlang", "s2", "S7", "scales", "sf", "sp", "spData", "spdep", "stringi", "stringr", "terra", "tibble", "tidyr", "tidyselect", "units", "utf8", "vctrs", "viridisLite", "withr", "wk" ], "_score": 4.544068044350276, "_indexed": true, "_nocasepkg": "spatialatomizer", "_universes": [ "bellayqian" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.2.8", "date": "2026-05-23T08:58:24.000Z", "distro": "noble", "commit": "cedaf0023efca72e0fb4da497f7bbf8ffadfcc70", "fileid": "101e00ae2992a05975f52e63fd0f62cb588b9ea5ca62c9f18519b8c7803cbbc1", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bellayqian/actions/runs/26328568985" }, { "r": "4.6.0", "os": "linux", "version": "0.2.8", "date": "2026-05-23T08:58:16.000Z", "distro": "noble", "commit": "cedaf0023efca72e0fb4da497f7bbf8ffadfcc70", "fileid": "6a124ed7264f0029b6717a1d2011d9e7d22130131e323b5a387fdcfa959fd35a", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bellayqian/actions/runs/26328568985" }, { "r": "4.5.3", "os": "mac", "version": "0.2.8", "date": "2026-05-23T08:58:33.000Z", "commit": "cedaf0023efca72e0fb4da497f7bbf8ffadfcc70", "fileid": "9d329a14745aa804f207cb2c0e68709a58e8e0686d59788112cf5a5e94ca9f15", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bellayqian/actions/runs/26328568985" }, { "r": "4.6.0", "os": "mac", "version": "0.2.8", "date": "2026-05-23T08:57:59.000Z", "commit": "cedaf0023efca72e0fb4da497f7bbf8ffadfcc70", "fileid": "b1035b741dbed3f53cfee057146e0fc437971b200356cfab249d7c5b6e55fa00", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bellayqian/actions/runs/26328568985" }, { "r": "4.6.0", "os": "wasm", "version": "0.2.8", "date": "2026-05-23T08:58:27.000Z", "commit": "cedaf0023efca72e0fb4da497f7bbf8ffadfcc70", "fileid": "c6df6807e398ff3a7da2128bdc4c7432b2279bb344d69d924cd98171d2f9574c", "status": "success", "buildurl": "https://github.com/r-universe/bellayqian/actions/runs/26328568985" }, { "r": "4.7.0", "os": "win", "version": "0.2.8", "date": "2026-05-23T08:57:09.000Z", "commit": "cedaf0023efca72e0fb4da497f7bbf8ffadfcc70", "fileid": "2436403c3c78fc71deea7a1827d1fa2e9287170f24d1284ab65df6213f04e2f0", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bellayqian/actions/runs/26328568985" }, { "r": "4.5.3", "os": "win", "version": "0.2.8", "date": "2026-05-23T08:57:05.000Z", "commit": "cedaf0023efca72e0fb4da497f7bbf8ffadfcc70", "fileid": "c0fc5970ec340a8aa5ef46e2146844aa69542eda18503afccf0572264c3480de", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bellayqian/actions/runs/26328568985" }, { "r": "4.6.0", "os": "win", "version": "0.2.8", "date": "2026-05-23T08:57:21.000Z", "commit": "cedaf0023efca72e0fb4da497f7bbf8ffadfcc70", "fileid": "8c53c2e0057b620a20e263042291a960f2cc778a548f1cc6711157ec1592441a", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bellayqian/actions/runs/26328568985" } ] }